IL_9QIW_072
3D structure
- PDB id
- 9QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UGAAC*GAA
- Length
- 8 nucleotides
- Bulged bases
- 9QIW|1|L5|A|2428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QIW_072 not in the Motif Atlas
- Geometric match to IL_5J7L_041
- Geometric discrepancy: 0.3284
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9QIW|1|L5|U|2415
9QIW|1|L5|G|2416
9QIW|1|L5|A|2417
9QIW|1|L5|A|2418
9QIW|1|L5|C|2419
*
9QIW|1|L5|G|2427
9QIW|1|L5|A|2428
9QIW|1|L5|A|2429
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CD
- GTP-binding protein 4
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ll
- 60S ribosomal protein L39
Coloring options: