3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGAAC*GAA
Length
8 nucleotides
Bulged bases
9QIW|1|L5|A|2428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_072 not in the Motif Atlas
Geometric match to IL_5J7L_041
Geometric discrepancy: 0.3284
The information below is about IL_5J7L_041
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

9QIW|1|L5|U|2415
9QIW|1|L5|G|2416
9QIW|1|L5|A|2417
9QIW|1|L5|A|2418
9QIW|1|L5|C|2419
*
9QIW|1|L5|G|2427
9QIW|1|L5|A|2428
9QIW|1|L5|A|2429

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CD
GTP-binding protein 4
Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ll
60S ribosomal protein L39

Coloring options:


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