3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
AACAAUG*CUAU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_084 not in the Motif Atlas
Homologous match to IL_8CRE_079
Geometric discrepancy: 0.204
The information below is about IL_8CRE_079
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22829.2
Basepair signature
cWW-L-tHS-L-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

9QIW|1|L5|A|2832
9QIW|1|L5|A|2833
9QIW|1|L5|C|2834
9QIW|1|L5|A|2835
9QIW|1|L5|A|2836
9QIW|1|L5|U|2837
9QIW|1|L5|G|2838
*
9QIW|1|L5|C|3850
9QIW|1|L5|U|3851
9QIW|1|L5|A|3852
9QIW|1|L5|U|3853

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LP
60S ribosomal protein L17
Chain Ld
60S ribosomal protein L31

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0738 s