3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CGC*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_102 not in the Motif Atlas
Geometric match to IL_7QQP_008
Geometric discrepancy: 0.1472
The information below is about IL_7QQP_008
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

9QIW|1|L5|C|4130
9QIW|1|L5|G|4131
9QIW|1|L5|C|4132
*
9QIW|1|L5|G|4152
9QIW|1|L5|C|4153
9QIW|1|L5|G|4154

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LG
60S ribosomal protein L7a
Chain LX
60S ribosomal protein L23a
Chain LZ
60S ribosomal protein L27

Coloring options:


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