IL_9QIW_103

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_103 not in the Motif Atlas

Geometric match to IL_4V9F_047

Geometric discrepancy: 0.1236

The information below is about IL_4V9F_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

9QIW|1|L5|G|4201
9QIW|1|L5|U|4202
9QIW|1|L5|A|4203
*
9QIW|1|L5|U|4229
9QIW|1|L5|C|4230
9QIW|1|L5|C|4231

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CK

Ribosome biogenesis regulatory protein homolog

Chain LJ

60S ribosomal protein L11

Chain LT

60S ribosomal protein L21