3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CCAU*AGGCG
Length
9 nucleotides
Bulged bases
9QIW|1|L5|C|4720
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_115 not in the Motif Atlas
Homologous match to IL_8P9A_342
Geometric discrepancy: 0.2278
The information below is about IL_8P9A_342
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
44

Unit IDs

9QIW|1|L5|C|4582
9QIW|1|L5|C|4583
9QIW|1|L5|A|4584
9QIW|1|L5|U|4585
*
9QIW|1|L5|A|4717
9QIW|1|L5|G|4718
9QIW|1|L5|G|4719
9QIW|1|L5|C|4720
9QIW|1|L5|G|4721

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LO
60S ribosomal protein L13a

Coloring options:


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