3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
AUUAU*AGAAU
Length
10 nucleotides
Bulged bases
9QIW|1|L5|A|4708
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_122 not in the Motif Atlas
Homologous match to IL_8P9A_348
Geometric discrepancy: 0.1497
The information below is about IL_8P9A_348
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_08938.1
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
22

Unit IDs

9QIW|1|L5|A|4681
9QIW|1|L5|U|4682
9QIW|1|L5|U|4683
9QIW|1|L5|A|4684
9QIW|1|L5|U|4685
*
9QIW|1|L5|A|4705
9QIW|1|L5|G|4706
9QIW|1|L5|A|4707
9QIW|1|L5|A|4708
9QIW|1|L5|U|4709

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CC
Guanine nucleotide-binding protein-like 3
Chain CE
Protein LLP homolog
Chain CH
Ribosome biogenesis protein NSA2 homolog
Chain LH
60S ribosomal protein L9
Chain LO
60S ribosomal protein L13a

Coloring options:


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