IL_9QIW_142

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUUAGUAC*GGAAUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_142 not in the Motif Atlas

Geometric match to IL_1JBR_001

Geometric discrepancy: 0.1485

The information below is about IL_1JBR_001

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9QIW|1|L7|G|71
9QIW|1|L7|U|72
9QIW|1|L7|U|73
9QIW|1|L7|A|74
9QIW|1|L7|G|75
9QIW|1|L7|U|76
9QIW|1|L7|A|77
9QIW|1|L7|C|78
*
9QIW|1|L7|G|98
9QIW|1|L7|G|99
9QIW|1|L7|A|100
9QIW|1|L7|A|101
9QIW|1|L7|U|102
9QIW|1|L7|A|103
9QIW|1|L7|C|104

Current chains

Chain L7

5S rRNA

Nearby chains

Chain CJ

Ribosome production factor 2 homolog