IL_9QJC_001

3D structure

PDB id

9QJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast pre-60S Domain II intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QJC_001 not in the Motif Atlas

Homologous match to IL_9PN5_015

Geometric discrepancy: 0.3941

The information below is about IL_9PN5_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

9QJC|1|1|U|429
9QJC|1|1|U|430
9QJC|1|1|U|431
*
9QJC|1|1|A|628
9QJC|1|1|U|629
9QJC|1|1|A|630

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

Ribosome biogenesis protein MAK21

Chain 6

Nucleolar complex protein 2

Chain O

60S ribosomal protein L16-A

Chain f

60S ribosomal protein L33-A