IL_9QQA_001

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_001 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.1565

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9QQA|1|A2|G|23
9QQA|1|A2|C|24
9QQA|1|A2|A|25
*
9QQA|1|A2|PSU|650
9QQA|1|A2|A|651
9QQA|1|A2|PSU|652

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS4

Chain Aw

40S ribosomal protein S23