IL_9QQA_009

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

9QQA|1|A2|G|113, 9QQA|1|A2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_009 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.31

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9QQA|1|A2|U|110
9QQA|1|A2|A|111
9QQA|1|A2|U|112
9QQA|1|A2|G|113
9QQA|1|A2|G|114
9QQA|1|A2|U|115
*
9QQA|1|A2|A|349
9QQA|1|A2|A|350
9QQA|1|A2|C|351
9QQA|1|A2|G|352

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8

Chain Ak

Small ribosomal subunit protein uS17