IL_9QQA_011

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9QQA|1|A2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_011 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.0954

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9QQA|1|A2|G|145
9QQA|1|A2|G|146
9QQA|1|A2|A|147
9QQA|1|A2|U|148
9QQA|1|A2|A|149
9QQA|1|A2|A|150
9QQA|1|A2|C|151
*
9QQA|1|A2|G|167
9QQA|1|A2|C|168
9QQA|1|A2|U|169
9QQA|1|A2|A|170
9QQA|1|A2|A|171
9QQA|1|A2|OMU|172
9QQA|1|A2|A|173
9QQA|1|A2|OMC|174

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain BW

Ribosomal protein L24