IL_9QQA_026

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_026 not in the Motif Atlas

Geometric match to IL_8CRE_418

Geometric discrepancy: 0.1202

The information below is about IL_8CRE_418

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

9QQA|1|A2|G|564
9QQA|1|A2|A|565
9QQA|1|A2|G|566
*
9QQA|1|A2|C|586
9QQA|1|A2|G|587
9QQA|1|A2|A|588
9QQA|1|A2|G|589
9QQA|1|A2|G|590
9QQA|1|A2|A2M|591
9QQA|1|A2|U|592
9QQA|1|A2|C|593

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Ai

Small ribosomal subunit protein uS4