IL_9QQA_030

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

9QQA|1|A2|A|629, 9QQA|1|A2|U|631, 9QQA|1|A2|U|632

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_030 not in the Motif Atlas

Geometric match to IL_8CRE_423

Geometric discrepancy: 0.1393

The information below is about IL_8CRE_423

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9QQA|1|A2|G|612
9QQA|1|A2|U|613
9QQA|1|A2|G|614
9QQA|1|A2|C|615
9QQA|1|A2|C|616
9QQA|1|A2|A|617
9QQA|1|A2|G|618
*
9QQA|1|A2|C|625
9QQA|1|A2|G|626
9QQA|1|A2|G|627
9QQA|1|A2|OMU|628
9QQA|1|A2|A|629
9QQA|1|A2|A|630
9QQA|1|A2|U|631
9QQA|1|A2|U|632
9QQA|1|A2|C|633

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23