IL_9QQA_040

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_040 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.085

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9QQA|1|A2|G|875
9QQA|1|A2|A|876
9QQA|1|A2|C|877
*
9QQA|1|A2|G|911
9QQA|1|A2|C|912
9QQA|1|A2|C|913

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ag

40S ribosomal protein S7

Chain Ak

Small ribosomal subunit protein uS17

Chain BR

Ribosomal protein L19