IL_9QQA_053
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQA_053 not in the Motif Atlas
- Geometric match to IL_4LFB_034
- Geometric discrepancy: 0.0795
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9QQA|1|A2|G|1169
9QQA|1|A2|G|1170
9QQA|1|A2|A|1171
9QQA|1|A2|G|1172
9QQA|1|A2|U|1173
9QQA|1|A2|A|1174
9QQA|1|A2|PSU|1175
9QQA|1|A2|G|1176
*
9QQA|1|A2|U|1187
9QQA|1|A2|G|1188
9QQA|1|A2|A|1189
9QQA|1|A2|A|1190
9QQA|1|A2|A|1191
9QQA|1|A2|C|1192
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- Small ribosomal subunit protein eS32
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: