IL_9QQA_058

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_058 not in the Motif Atlas

Geometric match to IL_8CRE_447

Geometric discrepancy: 0.1439

The information below is about IL_8CRE_447

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9QQA|1|A2|G|1236
9QQA|1|A2|G|1237
*
9QQA|1|A2|C|1522
9QQA|1|A2|A|1523
9QQA|1|A2|C|1524

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Ao

Small ribosomal subunit protein uS19

Chain Ar

Small ribosomal subunit protein uS13

Chain Ay

Small ribosomal subunit protein eS25