IL_9QQA_062

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

9QQA|1|A2|OMU|1327

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_062 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.1319

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9QQA|1|A2|G|1326
9QQA|1|A2|OMU|1327
9QQA|1|A2|G|1328
*
9QQA|1|A2|C|1503
9QQA|1|A2|C|1504

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ubiquitin-ribosomal protein eS31 fusion protein

Chain AG

Small ribosomal subunit protein uS14

Chain Aj

S10_plectin domain-containing protein