IL_9QQA_079

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9QQA|1|A2|C|1702, 9QQA|1|A2|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_079 not in the Motif Atlas

Geometric match to IL_8CRE_466

Geometric discrepancy: 0.1092

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9QQA|1|A2|C|1701
9QQA|1|A2|C|1702
9QQA|1|A2|G|1703
*
9QQA|1|A2|C|1834
9QQA|1|A2|A|1835
9QQA|1|A2|A|1836
9QQA|1|A2|G|1837

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

eS26

Chain AT

Transfer RNA; tRNA