IL_9QQA_080

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_080 not in the Motif Atlas

Geometric match to IL_5J7L_059

Geometric discrepancy: 0.091

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9QQA|1|A2|G|1703
9QQA|1|A2|OMC|1704
9QQA|1|A2|C|1705
9QQA|1|A2|C|1706
*
9QQA|1|A2|G|1830
9QQA|1|A2|U|1831
9QQA|1|A2|A|1832
9QQA|1|A2|6MZ|1833
9QQA|1|A2|C|1834

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Az

Small ribosomal subunit protein eS32

Chain B5

Large subunit ribosomal RNA; LSU rRNA