IL_9QQA_083

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_083 not in the Motif Atlas

Geometric match to IL_4J50_002

Geometric discrepancy: 0.1758

The information below is about IL_4J50_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9QQA|1|A2|U|1715
9QQA|1|A2|A|1716
9QQA|1|A2|C|1717
*
9QQA|1|A2|G|1818
9QQA|1|A2|A|1819
9QQA|1|A2|A|1820

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23

Chain Az

Small ribosomal subunit protein eS32

Chain B5

Large subunit ribosomal RNA; LSU rRNA