IL_9QQA_086

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*U(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_086 not in the Motif Atlas

Geometric match to IL_8CRE_473

Geometric discrepancy: 0.1242

The information below is about IL_8CRE_473

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9QQA|1|A2|U|1730
9QQA|1|A2|U|1731
9QQA|1|A2|A|1732
*
9QQA|1|A2|U|1804
9QQA|1|A2|OMU|1805
9QQA|1|A2|G|1806

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BV

Ribosomal protein L23