IL_9QQA_107
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 9QQA|1|B5|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQA_107 not in the Motif Atlas
- Geometric match to IL_9DFE_073
- Geometric discrepancy: 0.2438
- The information below is about IL_9DFE_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_24264.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9QQA|1|B5|C|339
9QQA|1|B5|C|340
9QQA|1|B5|G|341
9QQA|1|B5|G|342
*
9QQA|1|B8|C|32
9QQA|1|B8|G|33
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Bj
- Ribosomal protein L37
Coloring options: