IL_9QQA_109
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9QQA|1|B5|G|409, 9QQA|1|B5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQA_109 not in the Motif Atlas
- Geometric match to IL_8CRE_015
- Geometric discrepancy: 0.1474
- The information below is about IL_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
9QQA|1|B5|G|387
9QQA|1|B5|A|388
9QQA|1|B5|A|389
9QQA|1|B5|C|390
*
9QQA|1|B5|G|401
9QQA|1|B5|A|402
9QQA|1|B5|G|403
9QQA|1|B5|U|404
9QQA|1|B5|U|405
9QQA|1|B5|C|406
9QQA|1|B5|A|407
9QQA|1|B5|A|408
9QQA|1|B5|G|409
9QQA|1|B5|A|410
9QQA|1|B5|G|411
9QQA|1|B5|G|412
9QQA|1|B5|G|413
9QQA|1|B5|C|414
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BP
- Large ribosomal subunit protein uL22
- Chain BY
- Ribosomal protein L26
- Chain Bl
- 60S ribosomal protein L39-like
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