IL_9QQA_117

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9QQA|1|B5|G|484, 9QQA|1|B5|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_117 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1546

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9QQA|1|B5|G|483
9QQA|1|B5|G|484
9QQA|1|B5|U|485
9QQA|1|B5|C|486
*
9QQA|1|B5|G|665
9QQA|1|B5|C|666

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Br

[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B