IL_9QQA_121

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCUCG*CC

Length

8 nucleotides

Bulged bases

9QQA|1|B5|U|502, 9QQA|1|B5|C|503, 9QQA|1|B5|U|504, 9QQA|1|B5|C|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_121 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1706

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9QQA|1|B5|G|501
9QQA|1|B5|U|502
9QQA|1|B5|C|503
9QQA|1|B5|U|504
9QQA|1|B5|C|505
9QQA|1|B5|G|506
*
9QQA|1|B5|C|648
9QQA|1|B5|C|649

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

Large ribosomal subunit protein uL4