IL_9QQA_130

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9QQA|1|B5|G|743, 9QQA|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_130 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1098

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9QQA|1|B5|G|740
9QQA|1|B5|A|741
9QQA|1|B5|A|742
9QQA|1|B5|G|743
9QQA|1|B5|G|744
9QQA|1|B5|U|745
9QQA|1|B5|G|746
9QQA|1|B5|G|747
*
9QQA|1|B5|U|808
9QQA|1|B5|G|809
9QQA|1|B5|U|810
9QQA|1|B5|U|811
9QQA|1|B5|A|812
9QQA|1|B5|C|813
9QQA|1|B5|A|814
9QQA|1|B5|G|815
9QQA|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14

Chain BS

Large ribosomal subunit protein eL20