IL_9QQA_198

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_198 not in the Motif Atlas

Geometric match to IL_8P9A_302

Geometric discrepancy: 0.1226

The information below is about IL_8P9A_302

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9QQA|1|B5|A|2675
9QQA|1|B5|A|2676
9QQA|1|B5|C|2677
9QQA|1|B5|A|2678
9QQA|1|B5|A|2679
9QQA|1|B5|OMU|2680
9QQA|1|B5|G|2681
*
9QQA|1|B5|C|3582
9QQA|1|B5|PSU|3583
9QQA|1|B5|A|3584
9QQA|1|B5|PSU|3585

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

Large ribosomal subunit protein uL22

Chain Bd

60S ribosomal protein L31