IL_9QQA_211

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9QQA|1|B5|A|3443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_211 not in the Motif Atlas

Geometric match to IL_8CRE_092

Geometric discrepancy: 0.317

The information below is about IL_8CRE_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9QQA|1|B5|G|3442
9QQA|1|B5|A|3443
9QQA|1|B5|A|3444
9QQA|1|B5|U|3445
9QQA|1|B5|G|3446
*
9QQA|1|B5|C|3471
9QQA|1|B5|G|3472
9QQA|1|B5|C|3473

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

40S ribosomal protein S3a

Chain BA

Large ribosomal subunit protein uL2