IL_9QQA_223

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_223 not in the Motif Atlas

Geometric match to IL_4KTG_005

Geometric discrepancy: 0.1495

The information below is about IL_4KTG_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9QQA|1|B5|C|3861
9QQA|1|B5|G|3862
9QQA|1|B5|G|3863
*
9QQA|1|B5|C|3895
9QQA|1|B5|G|3896
9QQA|1|B5|G|3897

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27