IL_9QQA_242

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9QQA|1|B5|C|4466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_242 not in the Motif Atlas

Geometric match to IL_8P9A_342

Geometric discrepancy: 0.2446

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9QQA|1|B5|C|4328
9QQA|1|B5|C|4329
9QQA|1|B5|A|4330
9QQA|1|B5|U|4331
*
9QQA|1|B5|A|4463
9QQA|1|B5|G|4464
9QQA|1|B5|G|4465
9QQA|1|B5|C|4466
9QQA|1|B5|G|4467

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Large ribosomal subunit protein uL13