IL_9QQB_009

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

9QQB|1|A2|G|113, 9QQB|1|A2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_009 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2934

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9QQB|1|A2|U|110
9QQB|1|A2|A|111
9QQB|1|A2|U|112
9QQB|1|A2|G|113
9QQB|1|A2|G|114
9QQB|1|A2|U|115
*
9QQB|1|A2|A|349
9QQB|1|A2|A|350
9QQB|1|A2|C|351
9QQB|1|A2|G|352

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ah

40S ribosomal protein S8

Chain Ak

Small ribosomal subunit protein uS17