IL_9QQB_011

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9QQB|1|A2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_011 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.0971

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9QQB|1|A2|G|145
9QQB|1|A2|G|146
9QQB|1|A2|A|147
9QQB|1|A2|U|148
9QQB|1|A2|A|149
9QQB|1|A2|A|150
9QQB|1|A2|C|151
*
9QQB|1|A2|G|167
9QQB|1|A2|C|168
9QQB|1|A2|U|169
9QQB|1|A2|A|170
9QQB|1|A2|A|171
9QQB|1|A2|OMU|172
9QQB|1|A2|A|173
9QQB|1|A2|OMC|174

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain BW

Ribosomal protein L24