IL_9QQB_028

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_028 not in the Motif Atlas

Geometric match to IL_8P9A_402

Geometric discrepancy: 0.0892

The information below is about IL_8P9A_402

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9QQB|1|A2|A|600
9QQB|1|A2|G|601
9QQB|1|A2|OMG|602
9QQB|1|A2|G|603
9QQB|1|A2|C|604
9QQB|1|A2|A|605
9QQB|1|A2|A|606
9QQB|1|A2|G|607
*
9QQB|1|A2|C|637
9QQB|1|A2|U|638

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Ab

40S ribosomal protein S2

Chain Ai

Small ribosomal subunit protein uS4