IL_9QQB_030

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

9QQB|1|A2|OMU|628, 9QQB|1|A2|A|629, 9QQB|1|A2|U|631, 9QQB|1|A2|U|632

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_030 not in the Motif Atlas

Geometric match to IL_8P9A_404

Geometric discrepancy: 0.1652

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9QQB|1|A2|G|612
9QQB|1|A2|U|613
9QQB|1|A2|G|614
9QQB|1|A2|C|615
9QQB|1|A2|C|616
9QQB|1|A2|A|617
9QQB|1|A2|G|618
*
9QQB|1|A2|C|625
9QQB|1|A2|G|626
9QQB|1|A2|G|627
9QQB|1|A2|OMU|628
9QQB|1|A2|A|629
9QQB|1|A2|A|630
9QQB|1|A2|U|631
9QQB|1|A2|U|632
9QQB|1|A2|C|633

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23