IL_9QQB_033

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GCU*A(A2M)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_033 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1004

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9QQB|1|A2|G|674
9QQB|1|A2|C|675
9QQB|1|A2|U|676
*
9QQB|1|A2|A|1031
9QQB|1|A2|A2M|1032
9QQB|1|A2|C|1033

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Am

Small ribosomal subunit protein uS15

Chain B5

Large subunit ribosomal RNA; LSU rRNA