IL_9QQB_035

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_035 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2012

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9QQB|1|A2|G|693
9QQB|1|A2|A|694
9QQB|1|A2|G|695
9QQB|1|A2|C|696
*
9QQB|1|A2|G|732
9QQB|1|A2|U|733
9QQB|1|A2|C|734
9QQB|1|A2|C|735

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ag

40S ribosomal protein S7

Chain Av

Small ribosomal subunit protein uS8