IL_9QQB_038

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_038 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1463

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9QQB|1|A2|U|806
9QQB|1|A2|U|807
9QQB|1|A2|G|808
*
9QQB|1|A2|C|857
9QQB|1|A2|U|858
9QQB|1|A2|A|859

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ak

Small ribosomal subunit protein uS17

Chain Av

Small ribosomal subunit protein uS8