IL_9QQB_043

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_043 not in the Motif Atlas

Geometric match to IL_8P9A_417

Geometric discrepancy: 0.1211

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

9QQB|1|A2|A|923
9QQB|1|A2|G|924
*
9QQB|1|A2|C|1020
9QQB|1|A2|A|1021
9QQB|1|A2|U|1022
9QQB|1|A2|U|1023

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein eS27

Chain Am

Small ribosomal subunit protein uS15

Chain Av

Small ribosomal subunit protein uS8