IL_9QQB_045

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_045 not in the Motif Atlas

Geometric match to IL_8P9A_419

Geometric discrepancy: 0.1063

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9QQB|1|A2|G|929
9QQB|1|A2|G|930
9QQB|1|A2|C|931
9QQB|1|A2|C|932
*
9QQB|1|A2|G|1011
9QQB|1|A2|A|1012
9QQB|1|A2|A|1013
9QQB|1|A2|U|1014

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein eS27

Chain Aa

40S ribosomal protein S3a

Chain Am

Small ribosomal subunit protein uS15

Chain Bc

60S ribosomal protein L30