IL_9QQB_048

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9QQB|1|A2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_048 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.1898

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9QQB|1|A2|G|953
9QQB|1|A2|C|954
9QQB|1|A2|U|955
9QQB|1|A2|A|956
9QQB|1|A2|G|957
*
9QQB|1|A2|C|968
9QQB|1|A2|U|969
9QQB|1|A2|U|970
9QQB|1|A2|G|971
9QQB|1|A2|G|972
9QQB|1|A2|A|973
9QQB|1|A2|C|974
9QQB|1|A2|C|975

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain An

Small ribosomal subunit protein uS11

Chain B5

Large subunit ribosomal RNA; LSU rRNA