IL_9QQB_054

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_054 not in the Motif Atlas

Geometric match to IL_8CRE_442

Geometric discrepancy: 0.0833

The information below is about IL_8CRE_442

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9QQB|1|A2|G|1169
9QQB|1|A2|G|1170
9QQB|1|A2|A|1171
9QQB|1|A2|G|1172
9QQB|1|A2|U|1173
9QQB|1|A2|A|1174
9QQB|1|A2|PSU|1175
9QQB|1|A2|G|1176
*
9QQB|1|A2|U|1187
9QQB|1|A2|G|1188
9QQB|1|A2|A|1189
9QQB|1|A2|A|1190
9QQB|1|A2|A|1191
9QQB|1|A2|C|1192

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23

Chain Az

Small ribosomal subunit protein eS32