IL_9QQB_060

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_060 not in the Motif Atlas

Geometric match to IL_3GM7_002

Geometric discrepancy: 0.1346

The information below is about IL_3GM7_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9QQB|1|A2|G|1271
9QQB|1|A2|C|1272
9QQB|1|A2|C|1273
*
9QQB|1|A2|G|1511
9QQB|1|A2|U|1512
9QQB|1|A2|C|1513

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ubiquitin-ribosomal protein eS31 fusion protein

Chain AG

Small ribosomal subunit protein uS14

Chain Aj

S10_plectin domain-containing protein

Chain Ao

Small ribosomal subunit protein uS19