IL_9QQB_086

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_086 not in the Motif Atlas

Geometric match to IL_4J50_002

Geometric discrepancy: 0.1525

The information below is about IL_4J50_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9QQB|1|A2|U|1715
9QQB|1|A2|A|1716
9QQB|1|A2|C|1717
*
9QQB|1|A2|G|1818
9QQB|1|A2|A|1819
9QQB|1|A2|A|1820

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aw

40S ribosomal protein S23

Chain Az

Small ribosomal subunit protein eS32

Chain B5

Large subunit ribosomal RNA; LSU rRNA