IL_9QQB_096

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

9QQB|1|B5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_096 not in the Motif Atlas

Geometric match to IL_8CRE_003

Geometric discrepancy: 0.1515

The information below is about IL_8CRE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9QQB|1|B5|A|12
9QQB|1|B5|U|13
9QQB|1|B5|C|14
*
9QQB|1|B8|G|143
9QQB|1|B8|U|144

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15

Chain BX

Large ribosomal subunit protein uL23