IL_9QQB_117

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_117 not in the Motif Atlas

Geometric match to IL_8P9A_270

Geometric discrepancy: 0.1493

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9QQB|1|B5|G|462
9QQB|1|B5|A|463
9QQB|1|B5|G|464
*
9QQB|1|B5|C|685
9QQB|1|B5|A|686
9QQB|1|B5|C|687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain Br

[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B