IL_9QQB_133

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9QQB|1|B5|G|743, 9QQB|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_133 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1173

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9QQB|1|B5|G|740
9QQB|1|B5|A|741
9QQB|1|B5|A|742
9QQB|1|B5|G|743
9QQB|1|B5|G|744
9QQB|1|B5|U|745
9QQB|1|B5|G|746
9QQB|1|B5|G|747
*
9QQB|1|B5|U|808
9QQB|1|B5|G|809
9QQB|1|B5|U|810
9QQB|1|B5|U|811
9QQB|1|B5|A|812
9QQB|1|B5|C|813
9QQB|1|B5|A|814
9QQB|1|B5|G|815
9QQB|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14

Chain BS

Large ribosomal subunit protein eL20