IL_9QQB_136

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUC*GCUCG

Length

8 nucleotides

Bulged bases

9QQB|1|B5|C|1105, 9QQB|1|B5|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_136 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2862

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9QQB|1|B5|C|997
9QQB|1|B5|U|998
9QQB|1|B5|C|999
*
9QQB|1|B5|G|1104
9QQB|1|B5|C|1105
9QQB|1|B5|U|1106
9QQB|1|B5|C|1107
9QQB|1|B5|G|1108

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain Bb

60S ribosomal protein L29