IL_9QQB_166

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AGA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_166 not in the Motif Atlas

Geometric match to IL_8P9A_354

Geometric discrepancy: 0.1446

The information below is about IL_8P9A_354

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9QQB|1|B5|A|1688
9QQB|1|B5|G|1689
9QQB|1|B5|A|1690
*
9QQB|1|B5|PSU|1718
9QQB|1|B5|A|1719
9QQB|1|B5|PSU|1720

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Large ribosomal subunit protein uL18

Chain BI

60S ribosomal protein L10