IL_9QQB_168

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_168 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.1619

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9QQB|1|B5|G|1699
9QQB|1|B5|G|1700
9QQB|1|B5|C|1701
9QQB|1|B5|C|1702
*
9QQB|1|B5|G|1708
9QQB|1|B5|A|1709
9QQB|1|B5|U|1710
9QQB|1|B5|C|1711

Current chains

Chain B5

28S rRNA

Nearby chains