IL_9QQB_177

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9QQB|1|B5|U|1886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_177 not in the Motif Atlas

Geometric match to IL_8P9A_281

Geometric discrepancy: 0.1137

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9QQB|1|B5|G|1885
9QQB|1|B5|U|1886
9QQB|1|B5|G|1887
*
9QQB|1|B5|C|1974
9QQB|1|B5|C|1975

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BH

60S ribosomal protein L9

Chain BS

Large ribosomal subunit protein eL20

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein